Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs1015849 chr19:37946180 G/A 1.76E-13 133 45.47 36.12 17.1 KM Plot
TGCT rs10161520 chr12:107101685 T/C 0.000113 133 42.27 45.1 28.8 KM Plot
TGCT rs10165641 chr2:54754494 A/G 8.23E-5 133 45.7 44.05 20.6 KM Plot
TGCT rs10173686 chr2:221240757 A/G 1.95E-6 134 72.23 16.53 45.47 KM Plot
TGCT rs10189545 chr2:121953148 G/A 1.0E-8 134 41.27 60.63 20.6 KM Plot
TGCT rs10194929 chr2:242137372 C/G 0.000159 133 120.27 41.8 41.97 KM Plot
TGCT rs10219038 chr10:1121814 G/A 2.26E-13 132 42.03 66.9 17.1 KM Plot
TGCT rs10240211 chr7:23687039 C/G 6.8E-5 129 30.45 37.1 48.35 KM Plot
TGCT rs10253843 chr7:23684965 C/T 6.83E-5 129 30.45 36.23 49.93 KM Plot
TGCT rs10258271 chr7:127766400 C/G 1.58E-5 134 46.7 33.53 45.83 KM Plot
TGCT rs10269243 chr7:23686785 A/G 6.83E-5 129 30.45 36.23 49.93 KM Plot
TGCT rs10403582 chr19:37947839 C/T 1.37E-13 134 45.47 37.53 17.1 KM Plot
TGCT rs10407084 chr19:37907792 T/C 1.76E-13 133 45.47 36.12 17.1 KM Plot
TGCT rs10409204 chr19:37917692 G/A 2.27E-13 132 45.1 36.12 17.1 KM Plot
TGCT rs10411574 chr19:38001879 G/T 1.78E-13 133 46.3 35.03 17.1 KM Plot